PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G088100.1
Common NamePHAVU_010G088100g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 76aa    MW: 8677.03 Da    PI: 10.8793
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G088100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.3e-31959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Phvul.010G088100.1  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59
                        79***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.833161IPR002100Transcription factor, MADS-box
CDDcd002656.01E-38360No hitNo description
SuperFamilySSF554553.14E-30362IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-32323IPR002100Transcription factor, MADS-box
PfamPF003194.8E-281057IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS  60
RYHYFSSFNF PFSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3p57_J3e-19374277Myocyte-specific enhancer factor 2A
3p57_I3e-19374277Myocyte-specific enhancer factor 2A
3p57_D3e-19374277Myocyte-specific enhancer factor 2A
3p57_C3e-19374277Myocyte-specific enhancer factor 2A
3p57_B3e-19374277Myocyte-specific enhancer factor 2A
3p57_A3e-19374277Myocyte-specific enhancer factor 2A
3kov_J3e-19374277Myocyte-specific enhancer factor 2A
3kov_I3e-19374277Myocyte-specific enhancer factor 2A
3kov_B3e-19374277Myocyte-specific enhancer factor 2A
3kov_A3e-19374277Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-97AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134936.14e-49hypothetical protein PHAVU_010G088100g
RefseqXP_007134937.14e-49hypothetical protein PHAVU_010G088100g
SwissprotO646456e-37SOC1_ARATH; MADS-box protein SOC1
SwissprotQ9XJ607e-37MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLV7ARU44e-49V7ARU4_PHAVU; Uncharacterized protein
STRINGPOPTR_0014s07020.12e-37(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-38AGAMOUS-like 20